Logically the only Genjutsu that can work on Naruto are Infinite Tsukuyomi and Tsukuyomi. Saying that Rinnegan Genjutsu can break a Perfet Jinchuriki's chakra disruption is pretty much fan-fiction when a single 3T Uchiha could control the highest level of Bijuu (Kurama) by his or herself. I so no reason for why a Sharingan enhanced Rinnegan should not be able to solo neg diff into the netherworld all the Bijuu.
Sasuke himself was never on the same league as Itachi when it came to genjutsu in the first place, and that was shown quite a lot. Naruto's weakness was never Genjutsu, people like to assume that. Naruto's genjutsu release was always moderate, it was the fact that he always fought against shinobi who were so skilled at the art, they could inflict Genjutsu by pointing a single finger (Itachi-sama).
Infinite Tsukuyomi is the strongest Genjutsu known to man. I doubt that he would have such a resistance for that, even Sasuke with his Rinnegan needed to block the moonlight of the Genjutsu with Perfect Susano'o to completely shield them all away from it. Any genjutsu with Tsukuyomi in general is always incredibly OP.
LOL Funny enough Sasuke can cancel any Tsukuyomi Genjutsu XD XD