His midset in regards to Kabuto and his mother was to eliminate possible liabilities. You see in black ops you can't measure loyalty so in uncertainty you remove them.Im not going to argue for the sake of arguing so i will ask you this.
What was Danzo's mindset in relation to Kabuto and his mother?
Sai and his Brother?
As for Sai and his brother it was to remove attachment to individuals. A soldier without bonds can never enter a conflciting situation and compromise his mission. Let's say a mission involved assassinating two brothers who reminded Sai of such bonds he may falter.
Ninja aren't some noble creatures, they kill, assassinate, torture, take missions of all kinds. The black ops are meant to be the worst of the worst in that respect and root is their pinacle.
Edit: off topic but that's why Naruto being a ninja/Hokage makes no sense whatsoever.
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