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No what makes it different is the speed and power, because of this the technique causes pain. Just like how Sasuke chose to develop Enton from amaterasu, Itachi developed his tsukuyomi to manipulate time. Tsukuyomi is a powerful genjutsu, but Itachi who is a master at it simply has more control, therefore he can do more
Then why does sasuke use a different eye to manipulate amaterasu? Why doesn't itachi use a different eye to help him manipulate tsukuyomi better? The answers for these are that enton is the ability of sasuke's right eye not tsukuyomi and tsukuyomi is an ability of itachi's left eye. Itachi does not have enton and sasuke does not have tsukuyomi.