Because it takes mastery to fully release like that, and he wasn't fully releasing his seal either. The reason Killer Bee survived extraction when Madara was revived was because he fully releases his seal when letting out the 8 tails. On the contrary, Naruto nearly died from his identical extraction because he was not yet fully capable of fully releasing Kurama. They might have been good terms at that point, but he couldn't learn that feat in one night.
All the other biju didn't have masters at the time and would therefore take their true form with little effort.