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I don't know. Hagoromo is the common ancestor of Uchiha and Senju. Homura is the common ancestor of Hyuga and whatever else. That is why Uchiha+Senju=father doujutsu rinnegan (Hagoromo).
I understand your reasoning here but again it really has nothing to do with the clans. Uzumaki are distantly related to Senju just as the Hyuuga are distantly related to the Uchiha, yet Naruto was able to obtain the Rikudo Sage Mode regardless of being only Half Uzumaki who are only partly related to Senju.
It was because of his Ashura chakra. Same applies to Madara and Sasuke or anyone else who has become a transmigrant of the brothers.
The clans have little baring other than initially being one of the 2 to possess a doujutsu. (which is why I chose Neji as an example)
Since both Sharingan and Byakugan originated from Kaguya (who possess all 3 doujutsu) either Hyuga or Uchiha have the potential to awaken the Rinnegan (provided they are an Indra/Ashura incarnate).
The only real prequisite that is needed for the Rinnegan other than the special chakra of the brothers is belonging to either the Hyuga or the Uchiha as you need a doujutsu to begin with to awaken the Rinnegan.
Otherwise for the elite Uchiha, EMS is the pinnacle of their clans doujutsu and no higher.
I think it's because of their lineages, not because of them being former incarnates. If Hashi already died that means he is no longer an incarnate and that Naruto was, so how could his cells still have any traces of Ashura in it aside from him directly descending from Ashura like any other Senju?
Keep in mind Madara implanted Hashirama's DNA into his body after their battle at the valley of the end. Naruto and Sasuke were not born yet and Madara used Izanagi to ressurect himself sometime later. So they were both alive when this grafting of the flesh took place.
after that and many decades later in his elderly state Madara finally awakened the Rinnegan.
But they were both still very much alive when the initial melding of the chakra took place. Go back to the Hagoromo explanation to Naruto. It might help clear it up a bit if you read through it again.
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