First of all Naruto in his Full blown incarnation of Asura using Kurama to conjure up three heads, near the end of the Manga Naruto also attains 25% of the 8 remaining Bijuu making is multi-elemental Rasenshuriken one of the most destructive Ninjutsu of all time. A jutsu like that could surely put a dent into Susano'o.
Secondly Nagato, with is fully matured Rinnegan he could take down Susano'o with ease. With his revival path he could bring back a Susano'o user and then control him with the chakra rods to face any opposing Susano'o. If all else fails he can still make use of Chibaku Tensei and crush it along with a meteorite. My conclusion is all Rinnegan users should be able to take down Susano'o.
Thirdly Lord Hashiramas' Mukton should be able to do the trick.
Sage mode would be able to take down Susano'o.