We all know Itachi's Totsuka seals anything it pierces and Yata blocks everything which is why BZ called him invincible. What would happen if Itachi used Totsuka against Yata?
Yata would cancel out Totsuka or they both seal each other and cease to exist. The former is the likely outcome if the 3 databook entries are weighed against one another.
Considering Yata has a clause that says everything else "loses its meaning" this indicates that against Yata all other broken abilities no longer apply against Yata thus it wins
TB have a enchanted sealing power, sealing everything it pierces/cuts, is said to be immune to physical/spiritual/material/ethereal attacks or defenses.
The Answer is TB won't be negated by YT because being impervious to defense/reflection/property altercation. They clash, the world obliterates, from limitless force/energy generated because of the paradox. YT's Property Alteration cannot injure TB, it's invincible faced against it's attack.
Considering Yata has a clause that says everything else "loses its meaning" this indicates that against Yata all other broken abilities no longer apply against Yata thus it wins