Naruto is obviously the number one ninja from konoha so other than him...
1. Tsunade- She is Hokage for a reason. The only fights we have seen her in she has done some amazing things and i still don't think that is her full potential.
2. Kakashi Hatake- He is obviously the top Jonin in Konoha and seems to be next in line to be Hokage if not Naruto. Sharingan, Chidori, his intelligence, his senses... he is top of the line no doubt.
3 & 4. Tie between Maito Gai and Hiashi Hyuga- Both taijutsu and close range experts. However it is really hard to judge who is better than who. Gai is almost at the level of Kakashi, if you take his word for it, and he has been fighting and defeating some real strong enemies. At the same time Neji's abilities always seem amazing to me and I dont think he is at the level of his uncle yet. I could only imagine Hiashi to be top tier and being a close range, Taijutsu master I'm going to put him tied for third with Gai.
5. Yamato/Tenzo. Yamato is no joke with his wood abilities however they have made it a point to bring up how he is not as powerful as somebody with natural wood abilities is. Still, he holds his own in just about every situation (except his current one of course lol) and is obviously an Elite ninja to be assigned to protecting Naruto in the first place.
HONORABLE MENTIONS
•Choji Akimichi- Am I the only one who remembers Choji exploding with power during the war? He got the butterfly wings without the pills and kicked a whole bunch of undead ass. He obviously surpassed his father and is now one of the top badasses in series IMHO.
•Shikaku Nara- I can only imagine becoming Jonin Commander would mean you are pretty bad ass. And since he seems to be just as intelligent if not more intelligent than Shikamaru he must be te biggest pain in the ass to fight. If Shikamaru could defeat enemies much stronger than he is like the members of Akatsuki then i could only imagine what his father could do.
•Kurenai Yuhi- Lets not forget about her. We have no idea what her skill level is, only that she is a Genjutsu expert Jonin to the point it impresses Itachi. That Alone makes her pretty bad ass and I only wish we could see more of her in action. One thing is for sure though... that kid she just had is gonna be a bad ass Ninja when he grows up.
•EDIT•
•Shibi Aburame- I'm assuming that him being a Jonin of the Aburame clan that he is pretty bad ass with the bugs. The little we have seen of his clan fighting makes me wonder how they are not one the top clans in the whole series. They can defeat you just by standing still while the bugs do the dirty work. They're crazy powerful and should not be forgotten so much. Like I did lol. Thank you EDIT button.