Here is my long time.
War will start between water sand rain and konoha vs. Lightning Earth Grass.
Danzou will be controlled by Madara (mind raped) and think they are partners. Madara will use war to make his plans. Sasuke Mangekyou will mature at Kage meeting he will draw with danzou and will be called back by Madara when war has been declared. (Oh and danzou wont do anything bad to naruto as he is asign of power kyuubi. TSunade will die. Mizukages past is revealed. Naruto and Hinata have a moment. Sakura sai are sent on mission to combat cloud. Naruto illegally tags along . Naruto and Sai Defeat KIsame (not kill) and save Killer Bee
Danzou is seen negotiating With Madara. Before they can make peace with Raikage. Hawk begin to fight Naruto, Sai and Sakura. Karinvs. Sakura. Sai vs.Suguitsu. KIller Bee vs. Jugo. Naruto vs. Sasuke. Naruto unlocks Itachis power which helps him control 3 tails in Sage mode. Sasuke gets mad after a mention of Itachis name and unlocks Eternal Mangekyou as his second set of eyes were given to him by Itachi.
Naruto beats him by using 5 kyuubi rasen shurikens creating a storm that hurts Sasuke (as he was about to attack sakura) Naruto automatically inserts genjutsu of Itachi telling sasuke about madara.......
Sasuke is confused and Flees. Naruto and Sakura aren't happy.
Rai Kage is pleased and announces he will not stop war with Danzou and root, but with Konoha ninja yes......
Dazou is furious and wants naruto back. Madara makes danzou think he doesnt need Kyuubi anymore and Danzou can keep him, but as soon as naruto returns. Madara announced to zetsu he would kill Danzou and Steal Naruto and Killer Bee. New Akatsuki members Include a very weird looking Yagura (Wirelesssly (without spikes) connected to Gedo Mazou) He doesn't have rinnengan or black rods or any powers to do with nagato,just nine dragon seal. (yagura is under re animation by Kabuto, who has joined Akatsuki to kill Madara as he openly admits to Madaras face, but Madaa just laughs it off.other members a Scary dude from Tsuchigakure and Danzous Brother.
Madara also explains that now nagato is dead so is rinnengan, as the only reason Sage of the six paths managed to keep rinnengan alive is when he was old he used his ressurection technique on the eyes themselves however, nagato used his own on the people of konoha. Madara reveals eye of moon plan. the staue reincarnates his sharingan. th egedo mazou is destroyed in process. They use th tailed beasts as summons to destroy the five great nation.
Naruto, now that he has learnt all he can from the toad sages after a talk with elder toad.. that he is in prophecy and he learns more about madara and his parents. He trains with Killer Bee and Kakashi to control second and third change of nature and Kyuubi.
Sakura trains with katsuya in sage arts. Sasuke is made Akatsuki Member. Madara revals he will need sasuke's eyes.
End of Part 2.
4-month time skip.
5 filler Chapters.
Madara Gaiden:Brothers (a tale of Madaras youth and his brothers.
Chapter is 510 at this point.
Feedback please
I think a part 3 will follow.
enjoy.
Peace Out