Well lets see I think we're gonna see a part three here soon. Personally I think it's gonna go down like this.
~Naruto fights off Pein, they talk, he may find out about Sasuke etc
~Danzou comes out of hiding and overthrows the 5th, taking control of Konoha. No one resists becuase the village is in bad enough shape already.
~Danzou banishes Naruto saying that it was his fault the village was attacked in the first place. Naruto (being exhausted and knowing it's kind of true) leaves without a fight. He does ,however, busts out the whole "son of 4th" before he leaves.
~Soon after Naruto leaves Sasuke shows up. (Naruto may meet him and have a little talk Idk) He sees devisation and decides it isn't worth his time. He'll let them rebuild and then come for them.
~During Naruto's travels he meets killerbee who agrees to help him learn to control Kyuubi (most likely up to eight tails). Who knows he may throw in a little sword training.
~End of part 2, Time skip
^ Just my prediction, feel free to comment.
