Base Naruto Has No Speed Feats in base mode Apart from Saving Sakura from Sasuke.
Also This whole Naruto > kakashi Taijutsu was already explained, Deva path Had to Fight Fodder ninja, Kakashi,Choji and his dad, Destroy the whole village,Sm naruto, 6tailed naruto, use chibaku tensei, then had to fight Sm naruto again befor Base naruto even started fighting.
After All that Deva paths/Nagato's Stamina/Chakra Would of been affected, Slowing deva path down. Naruto wouldn't match a fresh Deva path.
Also When Naruto and Sasuke were clashing that again had nothing to do with Their speed, They were Just Running towards each other. You seem to Forget how Drained of Chakra Sasuke actually was at that Moment.
1)You are taking this whole "kakashi saying naruto has surpassed" him to far, Just Because kakashi said it doesn't mean naruto > kakashi in every area.
Naruto "surpassed" Kakashi in terms of Learning a Jutsu he could Not
2. Yes Lee got Caught by Kisame, But that Has nothing to do with his Speed, He was caught Off Guard by Kisame's Jutsu and got Caught, Simple as.