Yes. The Fruit took control over Kaguya, and it was the one pulling the strings from behind. Kaguya died the Day she ate the Fruit.
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No what i'm trying to say here is that Kaguya is the tree not being controled by it(aka she and the tree are the same entity, the original shinju had already died once Kaguya ate the fruit, so in time Kaguya inherited the will of the shinju because of the fruit she ate is the offspring of the shinju and now that she is one with the fruit, she herself became the fruit and eventually the Shinju/Juubi, which later on fought her own sons to take their chakra after it bloomed in them, which they eventually defeat, seal into Hagoromo, and having it's chakra divided into the nine bijuu, gedo mazou and among all mankind, and Hagoromo and his brother's chakra as well qs their descendants(Senju, Uchiha, Uzumaki and Hyuuga). Right now Kaguya/Shinju is trying to reclaim back as much chakra as she can by implementing Tsuki no me, to become complete again