That exclamation mark was for Itachi forming his body w/ crows. Before that exclamation Itachi already told Naruto he was already in Genjutsu, so it couldn't have been via the crows. If you are referring to
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then that's a reaction to seeing a crow in a Genjutsu, meaning Naruto realized he was caught already, and since he was caught already it couldn't have been from him looking at the crow. They highlighted a panel of his crow having Sharingan to signify that Naruto had been caught, not because the crow itself caught him.
And it's definitely not the same thing because Nagato's Animal Path summons only have that because of the Animal Path summoning jutsu. No reason why Itachi's crows would have his Sharingan in their eyes when he's not using any special jutsu.