Considering that Obito already mentioned that it had an effect.... I'd say it does.
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Also, Preta Path isn't automatic. You have to consciously activate it which means that if you DON'T, it doesn't do anything. This means that if Naruto were to fight the Six Paths of Pain, and he killed all five bodies but Preta Path, and came up behind him with a Rasenshuriken, theoretically, it would work as long as he didn't see the attack coming and didn't activate the Preta Path absorption jutsu.