No you are incorrect. Everytime Naruto lost chakra, he fainted, the Bijuu chakra wouldn't sustain him for that affect unless he actually lost Kurama. However, when you lose YOUR own chakra, you have those side affects.
Next, if he lost Bijuu chakra they would of explained that in the movie. Sadly, everytime he lost chakra it was a way for Toneri to escape or for Naruto/Hinata to finish him off with a combination technique. Listen to what you are saying for a minute
Kishimoto: Take away his power!
SP: Alright!
That is stupid if you think that is true.
Lastly, Sharringan/RSM were requirements from being Ashura/lndra's transmigrantes, if you actually believe Toneri has the ability to remove that. I don't know what to say.