if you are talking about when he's ems was shown he couldn't have used izanagi becuaseKabuto wasn't aware until he noticed his horn grow back, before that he thought it was all real
Also that panel where you see Madara's EMS, was hours before he got killed
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obito states it can only be used for a brief moment.
those who posses both senju and uchiha powers could perform a full izanagi.
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at the time of the fight madara did not posses senju dna