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Madara unlocked the Rinnegan by combining his Indra chakra with Hashirama's Ashura Chakra, Producing Hagoromo's chakra. Sasuke unlocked his Rinnegan by getting Chakra strait from Hagoromo. The reason that they are different could be that Madara's Indra Chakra was completely turned into Hagoromo Chakra, resulting in "Pure" Rinnegan, While Sasuke's Indra and Hagoromo Chakra remained separate, Resulting in a Rinnegan with some of Indra's powers, the Sharinnegan.
"Pure" rinnegan needs Hagoromo chakra, or Indra+Ashura, Sharinnegan needs Hagoromo and Indra Chakra.
"Pure" rinnegan needs Hagoromo chakra, or Indra+Ashura, Sharinnegan needs Hagoromo and Indra Chakra.