And you're ignoring the quality of each of those attributes.
I can very well apply the same logic and claim how EMS Sasuke > Indra because:
1. Both possess Rikudou's Yin Chakra.
2. Both possess Choku Tomoes.
3. Both possess Perfect Susano'o.
4. Sasuke has the EMS.
5. Sasuke also possess Hashirama's Chakra (if we want to include his state after Kabuto injected Senju Cells within his body).
Yet one who actually applies common sense would realize that this is not the case.
How about another example? EMS Sasuke = EMS Madara because:
1. Both possess Indra's Chakra.
2. Both possess EMS.
3. Both possess Choku Tomoes.
4. Both possess Perfect Susano'o.
Yet Madara is obviously superior, but apparently EMS Sasuke is his equal because they possess the same powers. Clearly, quality of each power has to be taken into consideration.
But I'll refute your point directly:
1. Yes, both possess the Mangekyo and the Rinnegan. However, the advantage Sasuke possesses is being able to use the Rinnegan and Sharingan simultaneously to enhance his ocular prowess which is something that made Kaguya fearsome according to Hagoromo's perspective, someone who possesses more of the Six Paths power than DRSM Madara.
2. Again, Sasuke's Rikudou Chakra provided a significant boost to the point where he could match DRSM Madara after he had possession over the Juubi's Full Power (9 Bijuus (Kaguya) + Shinju's Chakra) meaning that Sasuke's own Rikudou Chakra dwarfs DRSM Madara's own Rikudou Chakra.
3. Please, Madara's Susano'o didn't seem to have any significant jumps in the way Sasuke's did. Madara's V3 Susano'o still remained the same whereas EMS Sasuke's easily dwarfed EMS Madara's PS in terms of feats. Considering Rikudou Madara's Susano'o didn't make any notable improvements, his PS was likely around the same level of strength as EMS Madara's PS. Even then, does DRSM Madara have feats of his Chakra being able to rival one with the Juubi's full power or a Rikudou Senjutsu User with Kurama's Chakra? No he doesn't.
4. Madara's Wood Style is pathetic. His highest level of Mokuton shown was Wood Dragon which Full Kurama easily countered despite the Mokuton's ability to suppress a Bijuu's Power. Madara's PS is physically stronger than that and Rikudou Sasuke's is obviously much stronger, so that's merely a non-factor.
5. Haha, let me show you how pathetic of a power that even Madara confirmed it:
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6. Complete denial. Admitting that DRSM Madara would suddenly be able to react to Sasuke's Ameno when Juubidara (Post-Shinju) struggled reacting to Ameno is complete denial. I can't take that seriously.
Juubidara, Kaguya, and RSM had trouble reacting to Ameno (when timed properly). DRSM Madara doing something that Juubidara couldn't is illogical.